Install software package 'nanopolish' on baobab

[Anna.Ramisch]

Dear HPC team,
could you please install the software package nanopolish on Baobab?
Thank you already so much in advance,
Anna

[Adrien.Albert]

Hi @Anna.Ramisch ,

Great coincidence, I’m already on it

[Adrien.Albert]

New software installed: nanopolish version 0.13.3

Dear users, we have installed a new software: nanopolish 0.13.3: --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- nanopolish: nanopolish/0.13.3 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------…

[Aline.Real]

Thanks a lot for installing the package. I am trying to run one of the function of nanopolish that should be runned with threads 50 because otherwise, it takes more than 72 h to complete but I am getting this error :
You enabled multi-threading but you do not have a threadsafe HDF5
Please recompile nanopolish’s built-in libhdf5 or run with -t 1

There is a way to fix this?
Thanks a lot for your help.
Best
Aline

[Gael.Rossignol]

Dear Aline,

I have recompile nanopolish with “–enable-threadsafe” option. Could you please try again if your problems are now solved?

Best regards,