Dear users, we have installed a new software: EMU

```
ml foss/2020a EMU
python $EBROOTEMU/emu.py -h
usage: EMU [-h] [--version] [-npy FILE] [-plink FILE-PREFIX] [-e INT] [-k INT]
[-m INT] [-m_tole FLOAT] [-t INT] [-maf FLOAT] [-selection]
[-maf_save] [-bool_save] [-indf_save] [-index FILE] [-svd STRING]
[-svd_power INT] [-w FILE] [-s FILE] [-u FILE] [-no_accel] [-cost]
[-cost_step] [-o OUTPUT]
optional arguments:
-h, --help show this help message and exit
--version show program's version number and exit
-npy FILE Input numpy binary file (.npy)
-plink FILE-PREFIX Prefix for PLINK files (.bed, .bim, .fam)
-e INT Number of eigenvectors to use in IAF estimation
-k INT Number of eigenvectors to output in final SVD
-m INT Maximum iterations for estimation of individual allele
frequencies (100)
-m_tole FLOAT Tolerance for update in estimation of individual allele
frequencies (5e-7)
-t INT Number of threads
-maf FLOAT Threshold for minor allele frequencies (0.00)
-selection Perform PC-based selection scan (Galinsky et al. 2016)
-maf_save Save estimated population allele frequencies
-bool_save Save boolean vector used in MAF filtering (Binary)
-indf_save Save estimated singular matrices
-index FILE Index for guided allele frequencies
-svd STRING Method for performing truncated SVD (arpack/halko)
-svd_power INT Number of power iterations in randomized SVD (Halko)
-w FILE Left singular matrix (.w.npy)
-s FILE Singular values (.s.npy)
-u FILE Right singular matrix (.u.npy)
-no_accel Turn off acceleration for EM
-cost Output min-cost each iteration (DEBUG)
-cost_step Use acceleration based on cost
-o OUTPUT Prefix output name
```

Best