I am trying to run a snakemake workflow with the following slurm profile
verbose: false
printshellcmds: true
rerun-triggers: mtime
jobs: 50
use-apptainer: true
apptainer-args: >-
--bind /srv,/home
executor: slurm
default-resources:
slurm_account: golling
slurm_partition: shared-cpu,private-dpnc-cpu,public-cpu
runtime: 60
threads: 4
mem_mb: 20000
When I run a workflow with snakemake -s workflow/windowwidth.smk --profile workflow/profiles/slurm/, I get this error:
Unable to test the validity of the given or guessed SLURM account 'golling' with sacctmgr: sacctmgr: error: slurm_persist_conn_open_without_init: failed to open persistent connection to host:lunihpcslurm1.admin.unige.ch:6819: Network is unreachable
sacctmgr: error: Sending PersistInit msg: Network is unreachable
I am not sure how to debug this. Looks like sacct is not working? Any clues?
Cheers,
Debajyoti.