Mount issues on computing nodes of bamboo

HPC Support HPC issues
1

On the front-end of bamboo I can acess both CVMFS and acanas:

(bamboo)-[delislel@login1 ~]$ ls /acanas
biagetti  biosc  brunetti  celen  dpnc-test  ehret  hpc-exchange  m-BioinfoSupport  murrayry  sagon  seijo  test-astro  tonolla  wengery
(bamboo)-[delislel@login1 ~]$ ls /cvmfs/singularity.galaxyproject.org/
1  2  3  a  all  b  c  d  e  f  g  h  i  j  k  l  m  n  o  p  q  r  s  t  u  v  w  x  y  z

But in compute nodes I cannot:

(bamboo)-[delislel@login1 ~]$ salloc
salloc: Granted job allocation 294958
salloc: Nodes cpu001 are ready for job
(bamboo)-[delislel@cpu001 ~]$ ls /acanas
(bamboo)-[delislel@cpu001 ~]$ ls /acanas/m-BioinfoSupport
ls: cannot access '/acanas/m-BioinfoSupport': No such file or directory
(bamboo)-[delislel@cpu001 ~]$ ls /cvmfs/singularity.galaxyproject.org/

Thanks

PS: this is the cause of RStudio open on demand fail on bamboo (because it mounts /acanas/m-BioinfoSupport).

2

Thanks for the debug!

We are awaiting for the change to be done by the storage team to solve the issue about NFS. For CVMFS, We’ll check.

Best

3

Dear @Lucille.Delisle1

This is solved!

1 Like
4

Dear @Lucille.Delisle1

This is solved as well:

(bamboo)-[root@cpu001 ~]$ ls -d /acanas/m-BioinfoSupport
/acanas/m-BioinfoSupport
1 Like