I just started using baobab and I intend to run R simulations in parallel with it. To get started I am trying to replicate the example here: High Performance Computing - Baobab Hello World – Hugo Zzo Theme. I am trying to run it in the debug-cpu partition. But I get an email saying it failed with ExitCode1.
Then I run the command sbatch tutorial1.sh in the putty console, I am using winSCP to do the file transfer, the files are located at /home/users/t/terschuu/, I have tried to put the whole directory url in infile and outfile and on the sbatch command, but also got error. The last try was Slurm Job_id=11531419.
If you need help again, please provide the output in: report_simu.Rout (or any ouput you configure)
By the way you are using an old version of R:
Here all version available on clusters
(baobab)-[alberta@login1 R]$ ml spider R
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R:
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Description:
R is a free software environment for statistical computing and graphics.
Versions:
R/3.2.3
R/3.5.1
R/3.6.0
R/3.6.2
R/4.0.0
R/4.0.4
R/4.1.0
R/4.1.2
R/4.2.0
R/4.2.1
R/4.3.2
R/4.3.3
Other possible modules matches:
APR APR-util AmberTools Archive-Zip Armadillo Arrow BioPerl Bismark Blender Bracken Brotli Brunsli CUDAcore Cartopy CellProfiler CellRanger CellRanger-ARC CellRanger-ATAC CmdStanR ...
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To find other possible module matches execute:
$ module -r spider '.*R.*'
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For detailed information about a specific "R" package (including how to load the modules) use the module's full name.
Note that names that have a trailing (E) are extensions provided by other modules.
For example:
$ module spider R/4.3.3
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