Dear users, we have installed a new software: Bowtie2 2.5.1:
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Bowtie2: Bowtie2/2.5.1
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Description:
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters,
and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory
footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
You will need to load all module(s) on any one of the lines below before the "Bowtie2/2.5.1" module is available to load.
GCC/12.2.0
Help:
Description
===========
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads
to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s
of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome,
its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
More information
================
- Homepage: https://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Best,
HPC team