Dear users, we have installed a new software: SpaceRanger 3.0.1:
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SpaceRanger: SpaceRanger/3.0.1
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Description:
Space Ranger is a set of analysis pipelines that process Visium spatial RNA-seq output and brightfield microscope images in order to detect tissue, align reads, generate feature-spot matrices, perform clustering and gene
expression analysis, and place spots in spatial context on the slide image.
You will need to load all module(s) on any one of the lines below before the "SpaceRanger/3.0.1" module is available to load.
GCC/12.2.0
Help:
Description
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Space Ranger is a set of analysis pipelines that process Visium spatial RNA-seq output
and brightfield microscope images in order to detect tissue, align reads, generate feature-spot matrices,
perform clustering and gene expression analysis, and place spots in spatial context on the slide image.
More information
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- Homepage: https://support.10xgenomics.com/spatial-gene-expression/software/pipelines/latest/what-is-space-ranger
Best,
HPC team